Ankush Sharma

• Akshay, Akshay; Katoch, Mitali; Shekarchizadeh, Navid; Abedi, Masoud; Sharma, Ankush & Burkhard, Fiona C. [Show all 9 contributors for this article] (2024). Machine Learning Made Easy (MLme): A comprehensive toolkit for machine learning-driven data analysis. GigaScience. ISSN 2047-217X. 13. doi: 10.1093/gigascience/giad111.
• Spasevska, Ivana; Sharma, Ankush; Steen, Chloe Beate; Josefsson, Sarah Elisabet; Blaker, Yngvild Nuvin & Kolstad, Arne [Show all 26 contributors for this article] (2023). Diversity of intratumoral regulatory T cells in B-cell non-Hodgkin lymphoma. Blood Advances. ISSN 2473-9529. 7(23), p. 7216–7230. doi: 10.1182/bloodadvances.2023010158. Full text in Research Archive
• Spildrejorde, Mari; Samara, Athina; Sharma, Ankush; Leithaug, Magnus; Falck, Martin Bengt Alfred & Modafferi, Stefania [Show all 12 contributors for this article] (2023). Multi-omics approach reveals dysregulated genes during hESCs neuronal differentiation exposure to paracetamol. iScience. ISSN 2589-0042. 26:107755(10), p. 1–29. doi: 10.1016/j.isci.2023.107755. Full text in Research Archive
• Huang, Chengqun; Sharma, Ankush; Thakur, Reetu; Rai, Deepika; Katiki, Madhusudhanarao & Germano, Juliana de Freitas [Show all 15 contributors for this article] (2022). Asporin, an extracellular matrix protein, is a beneficial regulator of cardiac remodeling. Matrix Biology. ISSN 0945-053X. 110, p. 40–59. doi: 10.1016/j.matbio.2022.04.005.
• Samara, Athina; Spildrejorde, Mari; Sharma, Ankush; Falck, Martin ; Leithaug, Magnus & Modafferi, Stefania [Show all 11 contributors for this article] (2022). A multi-omics approach to visualize early neuronal differentiation from hESCs in 4D. iScience. ISSN 2589-0042. 25(11). doi: 10.1016/j.isci.2022.105279. Full text in Research Archive
• Sharma, Ankush & Capobianco, Enrico (2022). Non-Coding RNAs Are Brokers in Breast Cancer Interactome Networks and Add Discrimination Power between Subtypes. Journal of Clinical Medicine. ISSN 2077-0383. 11(8). doi: 10.3390/jcm11082103. Full text in Research Archive
• Sharma, Ankush; Akshay, Akshay; Rogne, Marie & Eskeland, Ragnhild (2021). ShinyArchR.UiO: user-friendly,integrative and open-source tool for visualization of single-cell ATAC-seq data using ArchR. Bioinformatics. ISSN 1367-4803. 38(3), p. 834–836. doi: 10.1093/bioinformatics/btab680. Full text in Research Archive Show summary

  Motivation: Mapping of chromatin accessibility landscapes in single-cells and the integration with gene expression enables a better understanding of gene regulatory mechanisms defining cell identities and cell-fate determination in development and disease. Generally, raw data generated from single-cell Assay for Transposase-Accessible Chromatin sequencing (scATAC-seq) are deposited in repositories that are generally inaccessible due to lack of in-depth knowledge of computational programming. Results: We have developed ShinyArchR.UiO, an R-based shiny app, that facilitates scATAC-seq data accessibility and visualisation in a user-friendly, interactive, and open-source web interface. ShinyArchR.UiO is an application that can streamline collaborative efforts for interpretation of massive chromatin accessibility datasets and allow for open access data sharing for wider audiences.

• de Freitas Germano, Juliana; Sharma, Ankush; Stastna, Miroslava; Huang, Chengqun; Aniag, Marianne & Aceves, Angie [Show all 11 contributors for this article] (2021). Proteomics of mouse heart ventricles reveals mitochondria and metabolism as major targets of a post-infarction short-acting glp1ra-therapy. International Journal of Molecular Sciences. ISSN 1661-6596. 22(16), p. 1–21. doi: 10.3390/ijms22168711. Full text in Research Archive
• Sharma, Ankush & Colonna, Giovanni (2021). System-Wide Pollution of Biomedical Data: Consequence of the Search for Hub Genes of Hepatocellular Carcinoma Without Spatiotemporal Consideration. Molecular Diagnosis & Therapy. ISSN 1177-1062. 25(1), p. 9–27. doi: 10.1007/s40291-020-00505-3.
• Piplani, Honit; Marek-Iannucci, Stefanie; Sin, Jon; Hou, Jean; Takahashi, Toshimasa & Sharma, Ankush [Show all 17 contributors for this article] (2019). Simvastatin induces autophagic flux to restore cerulein-impaired phagosome-lysosome fusion in acute pancreatitis. Biochimica et Biophysica Acta - Molecular Basis of Disease. ISSN 0925-4439. 1865(11), p. 1–14. doi: 10.1016/j.bbadis.2019.08.006. Full text in Research Archive

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• Sharma, Ankush & Colonna, Giovanni (2021). Correction to: System-Wide Pollution of Biomedical Data: Consequence of the Search for Hub Genes of Hepatocellular Carcinoma Without Spatiotemporal Consideration (Molecular Diagnosis & Therapy, (2021), 25, 1, (9-27), 10.1007/s40291-020-00505-3). Molecular Diagnosis & Therapy. ISSN 1177-1062. 25(3). doi: 10.1007/s40291-021-00527-5.

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